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Categories
Skills
- alphafold-database
Access AlphaFold 200M+ AI-predicted protein structures.
- arxiv-database
Search and retrieve preprints from arXiv via the Atom API.
- bids
The Brain Imaging Data Structure (BIDS) is a community standard for organizing and describing neuroscience and biomedical research datasets.
- bindingdb-database
Query BindingDB for measured drug-target binding affinities (Ki, Kd, IC50, EC50).
- cbioportal-database
Query cBioPortal for cancer genomics data including somatic mutations, copy number alterations, gene expression, and survival data across hundreds of…
- gnomad-database
Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint scores (pLI, LOEUF), and loss-of-function intolerance.
- gtex-database
Query GTEx (Genotype-Tissue Expression) portal for tissue-specific gene expression, eQTLs (expression quantitative trait loci), and sQTLs.
- interpro-database
Query InterPro for protein family, domain, and functional site annotations.
- jaspar-database
Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs).
- monarch-database
Query the Monarch Initiative knowledge graph for disease-gene-phenotype associations across species.
- pymc
Bayesian modeling with PyMC.
- pymoo
Multi-objective optimization framework.
- rdkit
Cheminformatics toolkit for fine-grained molecular control.
- rowan
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API.